Publicly Available Downloads
PSS downloads
Note that these downloads are not static, and are updated in real-time. Once a version release of PSS is made, fixed versions will also become available on this page.
| Format | Link | Description |
|---|---|---|
| SBGN-ML | download | Systems Biology Graphical Notation XML format |
| SBML | download | Systems Biology Markup Language XML format |
| DOT Language | download | Compatible with Graphviz applications (graphviz.org) |
| SIF/LGL | download | Simple interaction format of entire PSS compatible with Cytoscape (cytoscape.org), among others. |
| download | Accompanying node annotation file. | |
| SIF/LGL (DiNAR) | download | Simple interaction format of reaction network transformed to be compatible with DiNAR (bio.tools/dinar) (and also Cytoscape (cytoscape.org) ), restricted to Arabidopsis. |
| download | Accompanying node annotation file. | |
| boolnet | download | Boolean network format compatible with BoolDog (nib-si.github.io/BoolDoG), pyboolnet (pyboolnet.readthedocs.io), and BoolNet (cran.r-project.org/package=BoolNet), among others. |
| download | Accompanying node annotation file |
CKN downloads
| Format | Link | Description |
|---|---|---|
| SIF/LGL | download | Simple interaction format of reaction network compatible with DiNAR (bio.tools/dinar) and Cytoscape (cytoscape.org), among others. |
| download | Accompanying node annotation file |